Skills

🖳️ Programming Languages

• ★★★★★    R/Bioconductor
• ★★★★★    Bash
• ★★★★★    Python
• ★★★☆☆    SQL

🧬 Bioinformatics & Omics

• ★★★★★    Computational Method Development (haploMAGIC, ML pipelines)
• ★★★★★    Next Generation Sequencing (NGS) Workflow (fastQC, cutadapt, Bowtie, BEDTools, GATK, HaplotypeCaller)
• ★★★★★    (Single-Cell) RNA-seq Data Analysis (kallisto, DESeq2, edgeR, 10xGenomics, Seurat, SingleR)
• ★★★★★    Multi-omics Data Integration (feature selection, data transformation, clustering)
• ★★★★★    Transcriptomic Data (RNAseq) Analysis
• ★★★★☆    ATAC-seq Data Analysis (EDTA)
• ★★★★☆    Whole Genome Bisulfite Sequencing (WGBS) Data Analysis (Bismark)
• ★★★★☆    Variant Annotation Tools (SnpEff, ClinVar)

📈 Statistics & Data Visualization

• ★★★★★    Hypothesis Testing
• ★★★★★    Statistical Analysis
• ★★★★★    Data Visualization (ggplot2, matplotlib, seaborn)
• ★★★★★    Data Manipulation (dplyr, data.table, pandas)
• ★★★★★    Machine Learning & Predictive Modeling (tidymodels, h2o, scikit-learn)

🌐 Computing & Cloud

• ★★★★★    Linux Terminal
• ★★★★★    High Performance Computing (HPC)
• ★★★★★    Version Control (Git/GitHub)
• ★★★☆☆    Amazon Web Services (AWS; AWS Batch, Lambda, S3, etc)

🔀 Workflow Management

• ★★★★★    SLURM
• ★★★★★    Environment Management Systems (Bioconda, Conda)
• ★★★☆☆    Snakemake
• ★★★☆☆    Nextflow

📁 Documentation

• ★★★★★    Quarto/RMarkdown
• ★★★★★    Shiny
• ★★★★☆    LaTeX

🎯 Productivity

• ★★★★★    Fast Typing
• ★★★☆☆    Vibe Coding (Copilot)

🤝 Soft Skills

• ★    Communication
• ★    Collaboration & Teamwork
• ★    Resilience & Focus
• ★    Adapting to Change
• ★    Mentoring & Couching

🚗 Other

• ★    Category B Driving License